1. Xie Shaozhuo, Hou Siyu, Chen Jiajia, Qi Xin*. Integrative Single-Cell and Bulk RNA Sequencing Identifies a Macrophage-Related Prognostic Signature for Predicting Prognosis and Therapy Responses in Colorectal Cancer. International Journal of Molecular Sciences, 2025, 26(2): 811. 2. Zhao Yuanchun, Xun Dexu, Chen Jiajia, Qi Xin*. A novel machine learning-based immune prognostic signature for improving clinical outcomes and guiding therapy in colorectal cancer: an integrated bioinformatics and experimental study. BMC cancer, 2025, 25(1): 65. 3. Xun Dexu, Li Xue, Huang Lan, Zhao Yuanchun, Chen Jiajia, Qi Xin*. Machine learning-based analysis identifies a 13-gene prognostic signature to improve the clinical outcomes of colorectal cancer. Journal of Gastrointestinal Oncology, 2024, 15(5): 2100. 4. Qi Xin*, Zhao Yuanchun, Qi Zhuang, Hou Siyu, Chen Jiajia. Machine learning empowering drug discovery: Applications, opportunities and challenges. Molecules, 2024, 29(4): 903. 5. Hou Siyu, Zhao Yuanchun, Chen Jiajia, Lin Yuxin, Qi Xin*. Tumor-associated macrophages in colorectal cancer metastasis: molecular insights and translational perspectives. Journal of Translational Medicine, 2024, 22(1): 62. 6. Zhao Yuan, Chen Xingqi, Chen Jiajia, Qi Xin*. Decoding Connectivity Map-based drug repurposing for oncotherapy. Briefings in bioinformatics, 2023, 24(3): bbad142. 7. Qi Xin, Lin Yuxin, Chen Jiajia, Shen Bairong*. The landscape of emerging ceRNA crosstalks in colorectal cancer: Systems biological perspectives and translational applications. Clinical and translational medicine, 2020, 10(4). 8. Qi Xin#, Lin Yuxin #, Liu Xingyun, Chen Jiajia and Shen Bairong*. Biomarker discovery for the carcinogenic heterogeneity between colon and rectal cancers based on lncRNA-associated ceRNA network analysis. Frontiers in oncology, 2020, 10: 2345. 9. Qi Xin#, Yu Chunjiang#, Wang Yi, Lin Yuxin, Shen Bairong*. Network vulnerability-based and knowledge-guided identification of microRNA biomarkers indicating platinum resistance in high-grade serous ovarian cancer. Clinical and translational medicine, 2019, 8(1): 1-11. 10. Qi Xin#, Lin Yuxin#, Chen Jiajia, Shen Bairong*. Decoding competing endogenous RNA networks for cancer biomarker discovery. Briefings in bioinformatics, 2020, 21(2): 441-457. 11. Qi Xin, Li Shixue, Zhu Yaxi, Zhao Qian, Zhu Dengyun, Yu Jingjuan*. ZmDof3, a maize endosperm-specific Dof protein gene, regulates starch, accumulation and aleurone development in maize endosperm. Plant Molecular Biology, 2016, 93(1): 7-20. 12. Qi Xin #, Xie Shaojun#, Liu Yuwei#, Yi Fei, Yu Jingjuan*. Genome-wide annotation of genes and noncoding RNAs of foxtail millet in response to simulated drought stress by deep sequencing. Plant molecular biology, 2013, 83(4-5): 459-473. 13. Yu Chunjiang#, Qi Xin#, Lin Yuxin, Li Yin, Shen Bairong*. iODA: An integrated tool for analysis of cancer pathway consistency from heterogeneous multi-omics data. Journal of Biomedical Informatics, 2020, 112: 103605. 14. Peng Jing, Qi Xin, Chen Xiyang, Li Nan, Yu Jingjuan*. ZmDof30 negatively regulates the promoter activity of the pollen-specific gene Zm908. Frontiers in Plant Science, 2017, 8: 685. 15. Yi Fei#, Xie Shaojun#, Liu Yuwei, Qi Xin, Yu Jingjuan*. Genome-wide characterization of microRNA in foxtail millet (Setaria italica). BMC plant biology, 2013, 13(1): 212. 16. Liu Chen, Qi Xin, Zhao Qiao, Yu Jingjuan*. Characterization and functional analysis of the potato pollen-specific microtubule-associated protein SBgLR in tobacco. PloS one, 2013, 8(3): e60543. |